No. words: 1264; after pruning: 1238


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:497)  483  0.00 0.00 0.00  USDA002F_G07_BE446240Ld01P004C02C08F1_052.ab1        1   498 (119)  C USDA002R_G07_BE446240Ld01P004C02C08R1_052.ab1   (149)   498     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C USDA002R_G07_BE446240Ld01P004C02C08R1_052.ab1   647 
  253    USDA002F_G07_BE446240Ld01P004C02C08F1_052.ab1   104 
  261  C USDA002R_G07_BE446240Ld01P004C02C08R1_052.ab1   387 
  301    USDA002F_G07_BE446240Ld01P004C02C08F1_052.ab1   152 
  305  C USDA002R_G07_BE446240Ld01P004C02C08R1_052.ab1   343 
  409    USDA002F_G07_BE446240Ld01P004C02C08F1_052.ab1   260 
  429  C USDA002R_G07_BE446240Ld01P004C02C08R1_052.ab1   219 
  437    USDA002F_G07_BE446240Ld01P004C02C08F1_052.ab1   288 
  449  C USDA002R_G07_BE446240Ld01P004C02C08R1_052.ab1   199 
  461    USDA002F_G07_BE446240Ld01P004C02C08F1_052.ab1   312 
  473  C USDA002R_G07_BE446240Ld01P004C02C08R1_052.ab1   175 
  477    USDA002F_G07_BE446240Ld01P004C02C08F1_052.ab1   328 
  533  C USDA002R_G07_BE446240Ld01P004C02C08R1_052.ab1   115 
  545    USDA002F_G07_BE446240Ld01P004C02C08F1_052.ab1   396 
  581  C USDA002R_G07_BE446240Ld01P004C02C08R1_052.ab1    67 
  585    USDA002F_G07_BE446240Ld01P004C02C08F1_052.ab1   436 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0