No. words: 1056; after pruning: 1030


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:439)  422  0.23 0.00 0.23  USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1        1   440 (27)  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1   (150)   439     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1   589 
  337    USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1   187 
  341  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1   249 
  365    USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1   215 
  369  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1   221 
  425    USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1   275 
  445  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1   145 
  457    USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1   307 
  461  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1   129 
  469    USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1   319 
  481  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1   109 
  493    USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1   343 
  497  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1    93 
  537    USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1   387 
  541  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1    49 
  545    USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1   395 
  549  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1    41 
  557    USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1   407 
  569  C USDA002R_H07_BE446240Ld02P004C02C08R1_060.ab1    21 
  573    USDA002F_H07_BE446240Ld02P004C02C08F1_060.ab1   423 
Contig length: old 616, new 617

Contig length: old 617, new 617
New start: 0