No. words: 1194; after pruning: 1168


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:497)  482  0.00 0.00 0.00  USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1        1   498 (116)  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1   (82)   498     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1   580 
  162    USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1    80 
  166  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1   415 
  210    USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1   128 
  214  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1   367 
  230    USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1   148 
  238  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1   343 
  294    USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1   212 
  298  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1   283 
  354    USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1   272 
  362  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1   219 
  370    USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1   288 
  382  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1   199 
  394    USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1   312 
  406  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1   175 
  410    USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1   328 
  470  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1   111 
  474    USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1   392 
  514  C USDA002R_A08_BE446240Ld03P004C02C08R1_053.ab1    67 
  518    USDA002F_A08_BE446240Ld03P004C02C08F1_053.ab1   436 
Contig length: old 696, new 696

Contig length: old 696, new 696
New start: 0