No. words: 1207; after pruning: 1181


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:470)  452  0.21 0.00 0.21  USDA002F_B08_BE446240Ld04P004C02C08F1_061.ab1        1   471 (144)  C USDA002R_B08_BE446240Ld04P004C02C08R1_061.ab1   (122)   470     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C USDA002R_B08_BE446240Ld04P004C02C08R1_061.ab1   592 
  236    USDA002F_B08_BE446240Ld04P004C02C08F1_061.ab1   114 
  252  C USDA002R_B08_BE446240Ld04P004C02C08R1_061.ab1   341 
  388    USDA002F_B08_BE446240Ld04P004C02C08F1_061.ab1   266 
  408  C USDA002R_B08_BE446240Ld04P004C02C08R1_061.ab1   185 
  416    USDA002F_B08_BE446240Ld04P004C02C08F1_061.ab1   294 
  452  C USDA002R_B08_BE446240Ld04P004C02C08R1_061.ab1   141 
  456    USDA002F_B08_BE446240Ld04P004C02C08F1_061.ab1   334 
Contig length: old 736, new 737

Contig length: old 737, new 737
New start: 0