No. words: 1196; after pruning: 1170


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:464)  444  0.22 0.00 0.22  USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1        1   465 (122)  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   (145)   464     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   609 
  225    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1    80 
  229  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   381 
  245    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   100 
  253  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   357 
  361    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   216 
  373  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   237 
  397    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   252 
  405  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   205 
  417    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   272 
  421  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   189 
  441    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   296 
  449  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   161 
  453    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   308 
  481  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   129 
  485    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   340 
  493  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   117 
  497    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   352 
  501  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1   109 
  505    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   360 
  525  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1    85 
  533    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   388 
  561  C USDA002R_C08_BE446240Ld05P004C02C08R1_054.ab1    49 
  565    USDA002F_C08_BE446240Ld05P004C02C08F1_054.ab1   420 
Contig length: old 731, new 732

Contig length: old 732, new 732
New start: 0