No. words: 1207; after pruning: 1181


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 6.7 (1,1:472)  455  0.00 0.00 0.00  USDA002F_D08_BE446240Ld06P004C02C08F1_062.ab1        9   473 (157)  C USDA002R_D08_BE446240Ld06P004C02C08R1_062.ab1   (112)   465     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C USDA002R_D08_BE446240Ld06P004C02C08R1_062.ab1   577 
  216    USDA002F_D08_BE446240Ld06P004C02C08F1_062.ab1   112 
  232  C USDA002R_D08_BE446240Ld06P004C02C08R1_062.ab1   346 
  240    USDA002F_D08_BE446240Ld06P004C02C08F1_062.ab1   136 
  244  C USDA002R_D08_BE446240Ld06P004C02C08R1_062.ab1   334 
  408    USDA002F_D08_BE446240Ld06P004C02C08F1_062.ab1   304 
  444  C USDA002R_D08_BE446240Ld06P004C02C08R1_062.ab1   134 
  452    USDA002F_D08_BE446240Ld06P004C02C08F1_062.ab1   348 
  492  C USDA002R_D08_BE446240Ld06P004C02C08R1_062.ab1    86 
  496    USDA002F_D08_BE446240Ld06P004C02C08F1_062.ab1   392 
  512  C USDA002R_D08_BE446240Ld06P004C02C08R1_062.ab1    66 
  516    USDA002F_D08_BE446240Ld06P004C02C08F1_062.ab1   412 
  536  C USDA002R_D08_BE446240Ld06P004C02C08R1_062.ab1    42 
  540    USDA002F_D08_BE446240Ld06P004C02C08F1_062.ab1   436 
Contig length: old 734, new 734

Contig length: old 734, new 734
New start: 0