No. words: 1194; after pruning: 1168


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:464)  447  0.00 0.00 0.22  USDA002F_E08_BE446240Ld07P004C02C08F1_055.ab1        1   465 (116)  C USDA002R_E08_BE446240Ld07P004C02C08R1_055.ab1   (149)   464     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C USDA002R_E08_BE446240Ld07P004C02C08R1_055.ab1   613 
  193    USDA002F_E08_BE446240Ld07P004C02C08F1_055.ab1    44 
  197  C USDA002R_E08_BE446240Ld07P004C02C08R1_055.ab1   417 
  237    USDA002F_E08_BE446240Ld07P004C02C08F1_055.ab1    88 
  253  C USDA002R_E08_BE446240Ld07P004C02C08R1_055.ab1   361 
  273    USDA002F_E08_BE446240Ld07P004C02C08F1_055.ab1   124 
  277  C USDA002R_E08_BE446240Ld07P004C02C08R1_055.ab1   337 
  365    USDA002F_E08_BE446240Ld07P004C02C08F1_055.ab1   216 
  377  C USDA002R_E08_BE446240Ld07P004C02C08R1_055.ab1   237 
  445    USDA002F_E08_BE446240Ld07P004C02C08F1_055.ab1   296 
  497  C USDA002R_E08_BE446240Ld07P004C02C08R1_055.ab1   117 
  509    USDA002F_E08_BE446240Ld07P004C02C08F1_055.ab1   360 
  565  C USDA002R_E08_BE446240Ld07P004C02C08R1_055.ab1    49 
  573    USDA002F_E08_BE446240Ld07P004C02C08F1_055.ab1   424 
Contig length: old 729, new 730

Contig length: old 730, new 730
New start: 0