No. words: 1200; after pruning: 1160


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 7.9 (1,1:473)  440  0.22 0.22 0.22  USDA002F_F08_BE446240Ld08P004C02C08F1_063.ab1        7   469 (122)  C USDA002R_F08_BE446240Ld08P004C02C08R1_063.ab1   (142)   467     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C USDA002R_F08_BE446240Ld08P004C02C08R1_063.ab1   609 
  296    USDA002F_F08_BE446240Ld08P004C02C08F1_063.ab1   160 
  300  C USDA002R_F08_BE446240Ld08P004C02C08R1_063.ab1   310 
  364    USDA002F_F08_BE446240Ld08P004C02C08F1_063.ab1   228 
  384  C USDA002R_F08_BE446240Ld08P004C02C08R1_063.ab1   226 
  484    USDA002F_F08_BE446240Ld08P004C02C08F1_063.ab1   348 
  492  C USDA002R_F08_BE446240Ld08P004C02C08R1_063.ab1   118 
  496    USDA002F_F08_BE446240Ld08P004C02C08F1_063.ab1   360 
  560  C USDA002R_F08_BE446240Ld08P004C02C08R1_063.ab1    50 
  568    USDA002F_F08_BE446240Ld08P004C02C08F1_063.ab1   432 
  572  C USDA002R_F08_BE446240Ld08P004C02C08R1_063.ab1    38 
  576    USDA002F_F08_BE446240Ld08P004C02C08F1_063.ab1   440 
Contig length: old 726, new 727

Contig length: old 727, new 727
New start: 0 
S Change at: 604; seg lengths: entry 1, contig 1