No. words: 1201; after pruning: 1175


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:429)  407  0.00 0.00 0.46  USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1        1   431 (129)  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   (212)   429     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   641 
  240    USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1    28 
  252  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   390 
  288    USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1    76 
  292  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   350 
  360    USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1   148 
  364  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   278 
  396    USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1   184 
  400  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   242 
  432    USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1   220 
  440  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   202 
  456    USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1   244 
  468  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   174 
  472    USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1   260 
  480  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   162 
  484    USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1   272 
  488  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   154 
  492    USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1   280 
  524  C USDA002R_G08_BE446240Ld09P004C02C08R1_056.ab1   118 
  540    USDA002F_G08_BE446240Ld09P004C02C08F1_056.ab1   328 
Contig length: old 771, new 772

Contig length: old 772, new 772
New start: 0