No. words: 1031; after pruning: 1005


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 6.7 (1,1:354)  343  0.00 0.00 0.00  USDA010F_C08_BE489692Ld05P017F05P017F11F1_060.ab1        1   348 (183)  C USDA010R_C08_BE489692Ld05P017F05P017F11R1_060.ab1   (145)   355     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C USDA010R_C08_BE489692Ld05P017F05P017F11R1_060.ab1   500 
  393    USDA010F_C08_BE489692Ld05P017F05P017F11F1_060.ab1   248 
  453  C USDA010R_C08_BE489692Ld05P017F05P017F11R1_060.ab1    48 
  457    USDA010F_C08_BE489692Ld05P017F05P017F11F1_060.ab1   312 
Contig length: old 676, new 676

Contig length: old 676, new 676
New start: 0