No. words: 433; after pruning: 407


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 0.6 (1,1:171)  152  0.00 0.00 0.61  USDA023F_H06_BE489692Sn24P043H09P017F051F1_034.ab1       10   172 (44)  C USDA023R_H06_BE489692Sn24P043H09P017F051R1_034.ab1   (55)   162     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1  C USDA023R_H06_BE489692Sn24P043H09P017F051R1_034.ab1   217 
   83    USDA023F_H06_BE489692Sn24P043H09P017F051F1_034.ab1    37 
   99  C USDA023R_H06_BE489692Sn24P043H09P017F051R1_034.ab1   119 
  119    USDA023F_H06_BE489692Sn24P043H09P017F051F1_034.ab1    73 
  139  C USDA023R_H06_BE489692Sn24P043H09P017F051R1_034.ab1    79 
  147    USDA023F_H06_BE489692Sn24P043H09P017F051F1_034.ab1   101 
  155  C USDA023R_H06_BE489692Sn24P043H09P017F051R1_034.ab1    63 
  171    USDA023F_H06_BE489692Sn24P043H09P017F051F1_034.ab1   125 
Contig length: old 261, new 262

Contig length: old 262, new 262
New start: 0