No. words: 620; after pruning: 594


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    5   -2.9 -2.9 (1,1:269)  245  0.00 0.38 0.38  USDA023F_C02_BE489692Ta11P043G09P017F051F1_012.ab1        6   270 (41)  C USDA023R_C02_BE489692Ta11P043G09P017F051R1_012.ab1   (44)   265     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.9       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  126 nodes

 65 str. conn. components

Path
    1  C USDA023R_C02_BE489692Ta11P043G09P017F051R1_012.ab1   309 
  148    USDA023F_C02_BE489692Ta11P043G09P017F051F1_012.ab1   108 
  156  C USDA023R_C02_BE489692Ta11P043G09P017F051R1_012.ab1   154 
  172    USDA023F_C02_BE489692Ta11P043G09P017F051F1_012.ab1   132 
  188  C USDA023R_C02_BE489692Ta11P043G09P017F051R1_012.ab1   122 
  200    USDA023F_C02_BE489692Ta11P043G09P017F051F1_012.ab1   160 
Contig length: old 350, new 351

Contig length: old 351, new 351
New start: 0