No. words: 431; after pruning: 405


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    5   -2.3 -2.3 (1,1:170)  150  0.00 0.60 0.60  USDA023F_C05_BE489692Ta11P043H09P017F051F1_043.ab1        6   171 (43)  C USDA023R_C05_BE489692Ta11P043H09P017F051R1_043.ab1   (51)   166     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.3       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C USDA023R_C05_BE489692Ta11P043H09P017F051R1_043.ab1   217 
   77    USDA023F_C05_BE489692Ta11P043H09P017F051F1_043.ab1    30 
   97  C USDA023R_C05_BE489692Ta11P043H09P017F051R1_043.ab1   121 
  105    USDA023F_C05_BE489692Ta11P043H09P017F051F1_043.ab1    58 
  113  C USDA023R_C05_BE489692Ta11P043H09P017F051R1_043.ab1   105 
  117    USDA023F_C05_BE489692Ta11P043H09P017F051F1_043.ab1    70 
  157  C USDA023R_C05_BE489692Ta11P043H09P017F051R1_043.ab1    61 
  169    USDA023F_C05_BE489692Ta11P043H09P017F051F1_043.ab1   122 
  177  C USDA023R_C05_BE489692Ta11P043H09P017F051R1_043.ab1    41 
  181    USDA023F_C05_BE489692Ta11P043H09P017F051F1_043.ab1   134 
Contig length: old 260, new 261

Contig length: old 261, new 261
New start: 0