No. words: 403; after pruning: 377


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 0.0 (1,1:154)  142  0.00 0.00 0.00  USDA023F_D05_BE489692Ta12P043H09P017F051F1_041.ab1        6   155 (60)  C USDA023R_D05_BE489692Ta12P043H09P017F051R1_041.ab1   (38)   150     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  76 nodes

 40 str. conn. components

Path
    1  C USDA023R_D05_BE489692Ta12P043H09P017F051R1_041.ab1   188 
   62    USDA023F_D05_BE489692Ta12P043H09P017F051F1_041.ab1    29 
   86  C USDA023R_D05_BE489692Ta12P043H09P017F051R1_041.ab1   103 
   94    USDA023F_D05_BE489692Ta12P043H09P017F051F1_041.ab1    61 
  102  C USDA023R_D05_BE489692Ta12P043H09P017F051R1_041.ab1    87 
  106    USDA023F_D05_BE489692Ta12P043H09P017F051F1_041.ab1    73 
  126  C USDA023R_D05_BE489692Ta12P043H09P017F051R1_041.ab1    63 
  134    USDA023F_D05_BE489692Ta12P043H09P017F051F1_041.ab1   101 
  142  C USDA023R_D05_BE489692Ta12P043H09P017F051R1_041.ab1    47 
  158    USDA023F_D05_BE489692Ta12P043H09P017F051F1_041.ab1   125 
Contig length: old 248, new 248

Contig length: old 248, new 248
New start: 0