No. words: 430; after pruning: 404


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 0.8 (1,1:171)  152  0.00 0.00 0.61  USDA023F_A06_BE489692Ta17P043H09P017F051F1_048.ab1       10   172 (43)  C USDA023R_A06_BE489692Ta17P043H09P017F051R1_048.ab1   (53)   162     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1  C USDA023R_A06_BE489692Ta17P043H09P017F051R1_048.ab1   215 
   77    USDA023F_A06_BE489692Ta17P043H09P017F051F1_048.ab1    33 
   89  C USDA023R_A06_BE489692Ta17P043H09P017F051R1_048.ab1   127 
  117    USDA023F_A06_BE489692Ta17P043H09P017F051F1_048.ab1    73 
  133  C USDA023R_A06_BE489692Ta17P043H09P017F051R1_048.ab1    83 
  145    USDA023F_A06_BE489692Ta17P043H09P017F051F1_048.ab1   101 
  153  C USDA023R_A06_BE489692Ta17P043H09P017F051R1_048.ab1    63 
  161    USDA023F_A06_BE489692Ta17P043H09P017F051F1_048.ab1   117 
Contig length: old 258, new 259

Contig length: old 259, new 259
New start: 0