No. words: 446; after pruning: 420


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    8   -2.1 -2.1 (1,1:174)  155  0.00 0.00 0.60  USDA023F_E06_BE489692Ta21P043H09P017F051F1_040.ab1        9   175 (54)  C USDA023R_E06_BE489692Ta21P043H09P017F051R1_040.ab1   (51)   166     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.1       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1  C USDA023R_E06_BE489692Ta21P043H09P017F051R1_040.ab1   217 
   75    USDA023F_E06_BE489692Ta21P043H09P017F051F1_040.ab1    32 
   99  C USDA023R_E06_BE489692Ta21P043H09P017F051R1_040.ab1   119 
  119    USDA023F_E06_BE489692Ta21P043H09P017F051F1_040.ab1    76 
  135  C USDA023R_E06_BE489692Ta21P043H09P017F051R1_040.ab1    83 
  147    USDA023F_E06_BE489692Ta21P043H09P017F051F1_040.ab1   104 
  155  C USDA023R_E06_BE489692Ta21P043H09P017F051R1_040.ab1    63 
  163    USDA023F_E06_BE489692Ta21P043H09P017F051F1_040.ab1   120 
Contig length: old 271, new 272

Contig length: old 272, new 272
New start: 0