No. words: 440; after pruning: 414


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    9   -0.4 -0.4 (1,1:170)  151  0.00 0.00 0.62  USDA023F_G06_BE489692Ta23P043H09P017F051F1_036.ab1       10   171 (55)  C USDA023R_G06_BE489692Ta23P043H09P017F051R1_036.ab1   (53)   161     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.4       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1  C USDA023R_G06_BE489692Ta23P043H09P017F051R1_036.ab1   214 
   81    USDA023F_G06_BE489692Ta23P043H09P017F051F1_036.ab1    37 
   93  C USDA023R_G06_BE489692Ta23P043H09P017F051R1_036.ab1   122 
  125    USDA023F_G06_BE489692Ta23P043H09P017F051F1_036.ab1    81 
  133  C USDA023R_G06_BE489692Ta23P043H09P017F051R1_036.ab1    82 
  145    USDA023F_G06_BE489692Ta23P043H09P017F051F1_036.ab1   101 
  153  C USDA023R_G06_BE489692Ta23P043H09P017F051R1_036.ab1    62 
  169    USDA023F_G06_BE489692Ta23P043H09P017F051F1_036.ab1   125 
Contig length: old 269, new 270

Contig length: old 270, new 270
New start: 0