No. words: 436; after pruning: 410


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 2.8 (1,1:171)  156  0.00 0.60 0.00  USDA023F_C04_BE489692Td03P043H09P017F051F1_028.ab1        6   172 (43)  C USDA023R_C04_BE489692Td03P043H09P017F051R1_028.ab1   (53)   168     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1  C USDA023R_C04_BE489692Td03P043H09P017F051R1_028.ab1   221 
   84    USDA023F_C04_BE489692Td03P043H09P017F051F1_028.ab1    35 
  100  C USDA023R_C04_BE489692Td03P043H09P017F051R1_028.ab1   122 
  128    USDA023F_C04_BE489692Td03P043H09P017F051F1_028.ab1    79 
  140  C USDA023R_C04_BE489692Td03P043H09P017F051R1_028.ab1    82 
  148    USDA023F_C04_BE489692Td03P043H09P017F051F1_028.ab1    99 
  160  C USDA023R_C04_BE489692Td03P043H09P017F051R1_028.ab1    62 
  176    USDA023F_C04_BE489692Td03P043H09P017F051F1_028.ab1   127 
  180  C USDA023R_C04_BE489692Td03P043H09P017F051R1_028.ab1    42 
  184    USDA023F_C04_BE489692Td03P043H09P017F051F1_028.ab1   135 
Contig length: old 264, new 264

Contig length: old 264, new 264
New start: 0