No. words: 418; after pruning: 392


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    9   -1.4 -1.4 (1,1:170)  147  0.00 0.00 1.23  USDA023F_F04_BE489692Td06P043H09P017F051F1_022.ab1       10   172 (43)  C USDA023R_F04_BE489692Td06P043H09P017F051R1_022.ab1   (42)   161     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.4       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  76 nodes

 40 str. conn. components

Path
    1  C USDA023R_F04_BE489692Td06P043H09P017F051R1_022.ab1   203 
   70    USDA023F_F04_BE489692Td06P043H09P017F051F1_022.ab1    37 
   82  C USDA023R_F04_BE489692Td06P043H09P017F051R1_022.ab1   122 
  110    USDA023F_F04_BE489692Td06P043H09P017F051F1_022.ab1    77 
  142  C USDA023R_F04_BE489692Td06P043H09P017F051R1_022.ab1    62 
  158    USDA023F_F04_BE489692Td06P043H09P017F051F1_022.ab1   125 
Contig length: old 247, new 248

Contig length: old 248, new 248
New start: 0