No. words: 623; after pruning: 597


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    4   -0.4 -0.4 (1,1:267)  236  0.00 0.76 0.76  USDA023F_B02_BE489692Td10P043G09P017F051F1_014.ab1        6   269 (42)  C USDA023R_B02_BE489692Td10P043G09P017F051R1_014.ab1   (48)   264     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.4       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  122 nodes

 63 str. conn. components

Path
    1  C USDA023R_B02_BE489692Td10P043G09P017F051R1_014.ab1   312 
  124    USDA023F_B02_BE489692Td10P043G09P017F051F1_014.ab1    79 
  132  C USDA023R_B02_BE489692Td10P043G09P017F051R1_014.ab1   181 
  180    USDA023F_B02_BE489692Td10P043G09P017F051F1_014.ab1   135 
  188  C USDA023R_B02_BE489692Td10P043G09P017F051R1_014.ab1   125 
  204    USDA023F_B02_BE489692Td10P043G09P017F051F1_014.ab1   159 
  208  C USDA023R_B02_BE489692Td10P043G09P017F051R1_014.ab1   105 
  212    USDA023F_B02_BE489692Td10P043G09P017F051F1_014.ab1   167 
  232  C USDA023R_B02_BE489692Td10P043G09P017F051R1_014.ab1    81 
  244    USDA023F_B02_BE489692Td10P043G09P017F051F1_014.ab1   199 
  252  C USDA023R_B02_BE489692Td10P043G09P017F051R1_014.ab1    61 
  260    USDA023F_B02_BE489692Td10P043G09P017F051F1_014.ab1   215 
  268  C USDA023R_B02_BE489692Td10P043G09P017F051R1_014.ab1    45 
  276    USDA023F_B02_BE489692Td10P043G09P017F051F1_014.ab1   231 
Contig length: old 355, new 356

Contig length: old 356, new 356
New start: 0