No. words: 1182; after pruning: 1156


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.3 (1,1:549)  521  0.00 0.00 0.00  USDA012F_C01_BE490064As01P017G04P017G10F1_011.ab1        1   549 (41)  C USDA012R_C01_BE490064As01P017G04P017G10R1_011.ab1   (42)   550     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C USDA012R_C01_BE490064As01P017G04P017G10R1_011.ab1   592 
  190    USDA012F_C01_BE490064As01P017G04P017G10F1_011.ab1   148 
Contig length: old 632, new 632

Contig length: old 632, new 632
New start: 0