No. words: 1180; after pruning: 1154


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:545)  515  0.00 0.00 0.18  USDA012F_D01_BE490064As02P017G04P017G10F1_009.ab1        1   546 (48)  C USDA012R_D01_BE490064As02P017G04P017G10R1_009.ab1   (41)   545     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1  C USDA012R_D01_BE490064As02P017G04P017G10R1_009.ab1   586 
  381    USDA012F_D01_BE490064As02P017G04P017G10F1_009.ab1   340 
Contig length: old 634, new 635

Contig length: old 635, new 635
New start: 0