No. words: 1333; after pruning: 1307


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.9 (1,1:624)  581  0.00 0.00 0.16  USDA012F_E01_BE490064At01P017G04P017G10F1_007.ab1        3   624 (41)  C USDA012R_E01_BE490064At01P017G04P017G10R1_007.ab1   (46)   622     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C USDA012R_E01_BE490064At01P017G04P017G10R1_007.ab1   668 
   82    USDA012F_E01_BE490064At01P017G04P017G10F1_007.ab1    38 
   86  C USDA012R_E01_BE490064At01P017G04P017G10R1_007.ab1   583 
  102    USDA012F_E01_BE490064At01P017G04P017G10F1_007.ab1    58 
  126  C USDA012R_E01_BE490064At01P017G04P017G10R1_007.ab1   543 
  178    USDA012F_E01_BE490064At01P017G04P017G10F1_007.ab1   134 
  182  C USDA012R_E01_BE490064At01P017G04P017G10R1_007.ab1   487 
  190    USDA012F_E01_BE490064At01P017G04P017G10F1_007.ab1   146 
  374  C USDA012R_E01_BE490064At01P017G04P017G10R1_007.ab1   295 
  514    USDA012F_E01_BE490064At01P017G04P017G10F1_007.ab1   470 
Contig length: old 708, new 709

Contig length: old 709, new 709
New start: 0