No. words: 1321; after pruning: 1295


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.3 (1,1:621)  578  0.00 0.00 0.16  USDA012F_F01_BE490064At02P017G04P017G10F1_005.ab1        5   622 (38)  C USDA012R_F01_BE490064At02P017G04P017G10R1_005.ab1   (44)   617     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C USDA012R_F01_BE490064At02P017G04P017G10R1_005.ab1   661 
   76    USDA012F_F01_BE490064At02P017G04P017G10F1_005.ab1    36 
   84  C USDA012R_F01_BE490064At02P017G04P017G10R1_005.ab1   578 
  100    USDA012F_F01_BE490064At02P017G04P017G10F1_005.ab1    60 
  144  C USDA012R_F01_BE490064At02P017G04P017G10R1_005.ab1   518 
  460    USDA012F_F01_BE490064At02P017G04P017G10F1_005.ab1   420 
  600  C USDA012R_F01_BE490064At02P017G04P017G10R1_005.ab1    62 
  604    USDA012F_F01_BE490064At02P017G04P017G10F1_005.ab1   564 
Contig length: old 699, new 700

Contig length: old 700, new 700
New start: 0