No. words: 1397; after pruning: 1371


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:539)  503  0.00 0.00 0.37  USDA012F_H01_BE490064Ld02P017G04P017G10F1_001.ab1        1   540 (141)  C USDA012R_H01_BE490064Ld02P017G04P017G10R1_001.ab1   (177)   539     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C USDA012R_H01_BE490064Ld02P017G04P017G10R1_001.ab1   716 
  397    USDA012F_H01_BE490064Ld02P017G04P017G10F1_001.ab1   220 
Contig length: old 857, new 858

Contig length: old 858, new 858
New start: 0