No. words: 1561; after pruning: 1535


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.9 (1,1:628)  594  0.00 0.00 0.00  USDA012F_A02_BE490064Ld03P017G04P017G10F1_016.ab1        3   628 (168)  C USDA012R_A02_BE490064Ld03P017G04P017G10R1_016.ab1   (138)   627     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C USDA012R_A02_BE490064Ld03P017G04P017G10R1_016.ab1   765 
  194    USDA012F_A02_BE490064Ld03P017G04P017G10F1_016.ab1    58 
  198  C USDA012R_A02_BE490064Ld03P017G04P017G10R1_016.ab1   568 
  610    USDA012F_A02_BE490064Ld03P017G04P017G10F1_016.ab1   474 
  718  C USDA012R_A02_BE490064Ld03P017G04P017G10R1_016.ab1    48 
  722    USDA012F_A02_BE490064Ld03P017G04P017G10F1_016.ab1   586 
  754  C USDA012R_A02_BE490064Ld03P017G04P017G10R1_016.ab1    12 
  758    USDA012F_A02_BE490064Ld03P017G04P017G10F1_016.ab1   622 
Contig length: old 932, new 932

Contig length: old 932, new 932
New start: 0