No. words: 1562; after pruning: 1536


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.5 (1,1:629)  588  0.00 0.00 0.16  USDA012F_C02_BE490064Ld05P017G04P017G10F1_012.ab1        3   629 (170)  C USDA012R_C02_BE490064Ld05P017G04P017G10R1_012.ab1   (136)   627     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C USDA012R_C02_BE490064Ld05P017G04P017G10R1_012.ab1   763 
  160    USDA012F_C02_BE490064Ld05P017G04P017G10F1_012.ab1    26 
  164  C USDA012R_C02_BE490064Ld05P017G04P017G10R1_012.ab1   600 
  608    USDA012F_C02_BE490064Ld05P017G04P017G10F1_012.ab1   474 
Contig length: old 932, new 933

Contig length: old 933, new 933
New start: 0