No. words: 1573; after pruning: 1547


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.1 (1,1:630)  596  0.00 0.00 0.00  USDA012F_D02_BE490064Ld06P017G04P017G10F1_010.ab1        1   630 (168)  C USDA012R_D02_BE490064Ld06P017G04P017G10R1_010.ab1   (144)   631     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C USDA012R_D02_BE490064Ld06P017G04P017G10R1_010.ab1   775 
  172    USDA012F_D02_BE490064Ld06P017G04P017G10F1_010.ab1    28 
  176  C USDA012R_D02_BE490064Ld06P017G04P017G10R1_010.ab1   600 
  620    USDA012F_D02_BE490064Ld06P017G04P017G10F1_010.ab1   476 
Contig length: old 942, new 942

Contig length: old 942, new 942
New start: 0