No. words: 1355; after pruning: 1329


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.7 (1,1:545)  507  0.37 0.00 0.18  USDA012F_E02_BE490064Ld07P017G04P017G10F1_008.ab1        1   545 (96)  C USDA012R_E02_BE490064Ld07P017G04P017G10R1_008.ab1   (169)   545     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C USDA012R_E02_BE490064Ld07P017G04P017G10R1_008.ab1   714 
  561    USDA012F_E02_BE490064Ld07P017G04P017G10F1_008.ab1   392 
  665  C USDA012R_E02_BE490064Ld07P017G04P017G10R1_008.ab1    50 
  701    USDA012F_E02_BE490064Ld07P017G04P017G10F1_008.ab1   533 
Contig length: old 809, new 809

Contig length: old 809, new 810
New start: 0 
I Change at: 701; seg lengths: entry 1, contig 0