No. words: 1559; after pruning: 1533


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.5 (1,1:630)  593  0.00 0.00 0.16  USDA012F_F02_BE490064Ld08P017G04P017G10F1_006.ab1        1   630 (139)  C USDA012R_F02_BE490064Ld08P017G04P017G10R1_006.ab1   (160)   630     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C USDA012R_F02_BE490064Ld08P017G04P017G10R1_006.ab1   790 
  196    USDA012F_F02_BE490064Ld08P017G04P017G10F1_006.ab1    36 
  200  C USDA012R_F02_BE490064Ld08P017G04P017G10R1_006.ab1   591 
  636    USDA012F_F02_BE490064Ld08P017G04P017G10F1_006.ab1   476 
  744  C USDA012R_F02_BE490064Ld08P017G04P017G10R1_006.ab1    47 
  752    USDA012F_F02_BE490064Ld08P017G04P017G10F1_006.ab1   592 
  756  C USDA012R_F02_BE490064Ld08P017G04P017G10R1_006.ab1    35 
  764    USDA012F_F02_BE490064Ld08P017G04P017G10F1_006.ab1   604 
Contig length: old 928, new 929

Contig length: old 929, new 929
New start: 0