No. words: 1338; after pruning: 1298


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.9 (1,1:625)  590  0.16 0.00 0.00  USDA012F_B01_BE490064Tu02P017G04P017G10F1_013.ab1        3   626 (44)  C USDA012R_B01_BE490064Tu02P017G04P017G10R1_013.ab1   (44)   624     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C USDA012R_B01_BE490064Tu02P017G04P017G10R1_013.ab1   668 
  100    USDA012F_B01_BE490064Tu02P017G04P017G10F1_013.ab1    58 
  124  C USDA012R_B01_BE490064Tu02P017G04P017G10R1_013.ab1   545 
  188    USDA012F_B01_BE490064Tu02P017G04P017G10F1_013.ab1   146 
  384  C USDA012R_B01_BE490064Tu02P017G04P017G10R1_013.ab1   285 
  464    USDA012F_B01_BE490064Tu02P017G04P017G10F1_013.ab1   422 
  544  C USDA012R_B01_BE490064Tu02P017G04P017G10R1_013.ab1   125 
  560    USDA012F_B01_BE490064Tu02P017G04P017G10F1_013.ab1   518 
Contig length: old 712, new 712

Contig length: old 712, new 712
New start: 0 
S Change at: 48; seg lengths: entry 1, contig 1