No. words: 317; after pruning: 277


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.9 (1,1:98)   93  1.02 1.02 0.00  USDA015F_E08_BE494850Ta13P035H04P004A071F1_056.ab1        1    98 (68)  C USDA015R_E08_BE494850Ta13P035H04P004A071R1_056.ab1   (52)    99     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1  C USDA015R_E08_BE494850Ta13P035H04P004A071R1_056.ab1   151 
   56    USDA015F_E08_BE494850Ta13P035H04P004A071F1_056.ab1     4 
   69  C USDA015R_E08_BE494850Ta13P035H04P004A071R1_056.ab1    83 
   85    USDA015F_E08_BE494850Ta13P035H04P004A071F1_056.ab1    32 
   97  C USDA015R_E08_BE494850Ta13P035H04P004A071R1_056.ab1    55 
  101    USDA015F_E08_BE494850Ta13P035H04P004A071F1_056.ab1    48 
Contig length: old 218, new 219

Contig length: old 219, new 219
New start: 0