No. words: 320; after pruning: 280


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.0 (1,1:99)   94  1.00 0.00 1.00  USDA015F_B09_BE494850Ta18P035H04P004A071F1_077.ab1        1   100 (68)  C USDA015R_B09_BE494850Ta18P035H04P004A071R1_077.ab1   (53)    99     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  46 nodes

 25 str. conn. components

Path
    1  C USDA015R_B09_BE494850Ta18P035H04P004A071R1_077.ab1   152 
   58    USDA015F_B09_BE494850Ta18P035H04P004A071F1_077.ab1     5 
   67  C USDA015R_B09_BE494850Ta18P035H04P004A071R1_077.ab1    86 
   87    USDA015F_B09_BE494850Ta18P035H04P004A071F1_077.ab1    34 
   99  C USDA015R_B09_BE494850Ta18P035H04P004A071R1_077.ab1    54 
  111    USDA015F_B09_BE494850Ta18P035H04P004A071F1_077.ab1    58 
Contig length: old 220, new 221

Contig length: old 221, new 221
New start: 0