No. words: 311; after pruning: 271


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -0.5 -0.5 (1,1:94)   79  2.17 1.09 1.09  USDA015F_C09_BE494850Ta19P035H04P004A071F1_075.ab1        4    95 (66)  C USDA015R_C09_BE494850Ta19P035H04P004A071R1_075.ab1   (58)    92     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.5       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  36 nodes

 20 str. conn. components

Path
    1  C USDA015R_C09_BE494850Ta19P035H04P004A071R1_075.ab1   150 
   93    USDA015F_C09_BE494850Ta19P035H04P004A071F1_075.ab1    37 
   97  C USDA015R_C09_BE494850Ta19P035H04P004A071R1_075.ab1    54 
  105    USDA015F_C09_BE494850Ta19P035H04P004A071F1_075.ab1    49 
Contig length: old 216, new 217

Contig length: old 217, new 217
New start: 0 
S Change at: 61; seg lengths: entry 1, contig 1