No. words: 310; after pruning: 270


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.7 (1,1:91)   83  2.17 0.00 1.09  USDA015F_G09_BE494850Ta23P035H04P004A071F1_067.ab1        1    92 (68)  C USDA015R_G09_BE494850Ta23P035H04P004A071R1_067.ab1   (59)    91     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  40 nodes

 22 str. conn. components

Path
    1  C USDA015R_G09_BE494850Ta23P035H04P004A071R1_067.ab1   150 
   69    USDA015F_G09_BE494850Ta23P035H04P004A071F1_067.ab1    10 
   73  C USDA015R_G09_BE494850Ta23P035H04P004A071R1_067.ab1    78 
   85    USDA015F_G09_BE494850Ta23P035H04P004A071F1_067.ab1    26 
   97  C USDA015R_G09_BE494850Ta23P035H04P004A071R1_067.ab1    54 
  101    USDA015F_G09_BE494850Ta23P035H04P004A071F1_067.ab1    42 
  105  C USDA015R_G09_BE494850Ta23P035H04P004A071R1_067.ab1    46 
  109    USDA015F_G09_BE494850Ta23P035H04P004A071F1_067.ab1    50 
  117  C USDA015R_G09_BE494850Ta23P035H04P004A071R1_067.ab1    34 
  121    USDA015F_G09_BE494850Ta23P035H04P004A071F1_067.ab1    62 
Contig length: old 218, new 219

Contig length: old 219, new 219
New start: 0 
S Change at: 61; seg lengths: entry 1, contig 1