No. words: 316; after pruning: 276


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.0 (1,1:98)   93  1.01 0.00 1.01  USDA015F_E07_BE494850Td05P035H04P004A071F1_055.ab1        1    99 (68)  C USDA015R_E07_BE494850Td05P035H04P004A071R1_055.ab1   (51)    98     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  46 nodes

 25 str. conn. components

Path
    1  C USDA015R_E07_BE494850Td05P035H04P004A071R1_055.ab1   149 
   55    USDA015F_E07_BE494850Td05P035H04P004A071F1_055.ab1     4 
   80  C USDA015R_E07_BE494850Td05P035H04P004A071R1_055.ab1    70 
   84    USDA015F_E07_BE494850Td05P035H04P004A071F1_055.ab1    33 
   96  C USDA015R_E07_BE494850Td05P035H04P004A071R1_055.ab1    54 
  100    USDA015F_E07_BE494850Td05P035H04P004A071F1_055.ab1    49 
Contig length: old 217, new 218

Contig length: old 218, new 218
New start: 0