No. words: 315; after pruning: 275


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.0 (1,1:96)   91  1.03 0.00 1.03  USDA015F_G07_BE494850Td07P035H04P004A071F1_051.ab1        1    97 (68)  C USDA015R_G07_BE494850Td07P035H04P004A071R1_051.ab1   (54)    96     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1  C USDA015R_G07_BE494850Td07P035H04P004A071R1_051.ab1   150 
   69    USDA015F_G07_BE494850Td07P035H04P004A071F1_051.ab1    15 
   73  C USDA015R_G07_BE494850Td07P035H04P004A071R1_051.ab1    78 
   85    USDA015F_G07_BE494850Td07P035H04P004A071F1_051.ab1    31 
  113  C USDA015R_G07_BE494850Td07P035H04P004A071R1_051.ab1    38 
  117    USDA015F_G07_BE494850Td07P035H04P004A071F1_051.ab1    63 
Contig length: old 218, new 219

Contig length: old 219, new 219
New start: 0 
S Change at: 61; seg lengths: entry 1, contig 1