No. words: 487; after pruning: 461


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -1.3 -1.3 (1,1:308)  102  0.85 1.69 0.00  USDA014F_F05_BE495542At02P032E01P032E07F1_037.ab1        5   122 (0)  C USDA014R_F05_BE495542At02P032E01P032E07R1_037.ab1   (59)   306   187 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.3       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1  C USDA014R_F05_BE495542At02P032E01P032E07R1_037.ab1   365 
Contig length: old 365, new 365

Contig length: old 365, new 365
New start: 0