No. words: 823; after pruning: 797


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.5 (1,1:350)  339  0.00 0.28 0.00  USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1        1   351 (57)  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1   (63)   352     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1   415 
   93    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1    29 
   97  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1   319 
  133    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1    69 
  141  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1   275 
  145    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1    81 
  173  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1   243 
  177    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1   113 
  181  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1   235 
  205    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1   141 
  217  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1   199 
  241    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1   177 
  301  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1   115 
  313    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1   249 
  325  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1    91 
  329    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1   265 
  341  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1    75 
  353    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1   289 
  373  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1    43 
  377    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1   313 
  381  C USDA014R_E07_BE495786At01P032F01P032F07R1_055.ab1    35 
  393    USDA014F_E07_BE495786At01P032F01P032F07F1_055.ab1   329 
Contig length: old 472, new 472

Contig length: old 472, new 472
New start: 0