No. words: 1014; after pruning: 988


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.4 (1,1:341)  325  0.00 0.59 0.00  USDA014F_H07_BE495786Ld02P032F01P032F07F1_049.ab1        1   341 (192)  C USDA014R_H07_BE495786Ld02P032F01P032F07R1_049.ab1   (138)   343     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C USDA014R_H07_BE495786Ld02P032F01P032F07R1_049.ab1   481 
  241    USDA014F_H07_BE495786Ld02P032F01P032F07F1_049.ab1   101 
  245  C USDA014R_H07_BE495786Ld02P032F01P032F07R1_049.ab1   237 
  253    USDA014F_H07_BE495786Ld02P032F01P032F07F1_049.ab1   113 
  289  C USDA014R_H07_BE495786Ld02P032F01P032F07R1_049.ab1   193 
  337    USDA014F_H07_BE495786Ld02P032F01P032F07F1_049.ab1   197 
  341  C USDA014R_H07_BE495786Ld02P032F01P032F07R1_049.ab1   141 
  369    USDA014F_H07_BE495786Ld02P032F01P032F07F1_049.ab1   229 
  377  C USDA014R_H07_BE495786Ld02P032F01P032F07R1_049.ab1   105 
  389    USDA014F_H07_BE495786Ld02P032F01P032F07F1_049.ab1   249 
  409  C USDA014R_H07_BE495786Ld02P032F01P032F07R1_049.ab1    73 
  413    USDA014F_H07_BE495786Ld02P032F01P032F07F1_049.ab1   273 
  433  C USDA014R_H07_BE495786Ld02P032F01P032F07R1_049.ab1    49 
  437    USDA014F_H07_BE495786Ld02P032F01P032F07F1_049.ab1   297 
  445  C USDA014R_H07_BE495786Ld02P032F01P032F07R1_049.ab1    37 
  449    USDA014F_H07_BE495786Ld02P032F01P032F07F1_049.ab1   309 
Contig length: old 672, new 673

Contig length: old 673, new 673
New start: 0