No. words: 1039; after pruning: 1013


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:371)  354  0.00 0.54 0.00  USDA014F_B08_BE495786Ld04P032F01P032F07F1_062.ab1        1   371 (163)  C USDA014R_B08_BE495786Ld04P032F01P032F07R1_062.ab1   (132)   373     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1  C USDA014R_B08_BE495786Ld04P032F01P032F07R1_062.ab1   505 
  409    USDA014F_B08_BE495786Ld04P032F01P032F07F1_062.ab1   275 
  461  C USDA014R_B08_BE495786Ld04P032F01P032F07R1_062.ab1    45 
  465    USDA014F_B08_BE495786Ld04P032F01P032F07F1_062.ab1   331 
Contig length: old 667, new 668

Contig length: old 668, new 668
New start: 0