No. words: 1069; after pruning: 1043


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.8 (1,1:369)  351  0.00 0.54 0.00  USDA014F_E08_BE495786Ld07P032F01P032F07F1_056.ab1        1   369 (191)  C USDA014R_E08_BE495786Ld07P032F01P032F07R1_056.ab1   (138)   371     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C USDA014R_E08_BE495786Ld07P032F01P032F07R1_056.ab1   509 
  381    USDA014F_E08_BE495786Ld07P032F01P032F07F1_056.ab1   241 
  401  C USDA014R_E08_BE495786Ld07P032F01P032F07R1_056.ab1   109 
  413    USDA014F_E08_BE495786Ld07P032F01P032F07F1_056.ab1   273 
  417  C USDA014R_E08_BE495786Ld07P032F01P032F07R1_056.ab1    93 
  425    USDA014F_E08_BE495786Ld07P032F01P032F07F1_056.ab1   285 
  429  C USDA014R_E08_BE495786Ld07P032F01P032F07R1_056.ab1    81 
  441    USDA014F_E08_BE495786Ld07P032F01P032F07F1_056.ab1   301 
  449  C USDA014R_E08_BE495786Ld07P032F01P032F07R1_056.ab1    61 
  469    USDA014F_E08_BE495786Ld07P032F01P032F07F1_056.ab1   329 
  473  C USDA014R_E08_BE495786Ld07P032F01P032F07R1_056.ab1    37 
  481    USDA014F_E08_BE495786Ld07P032F01P032F07F1_056.ab1   341 
Contig length: old 699, new 700

Contig length: old 700, new 700
New start: 0