No. words: 1042; after pruning: 1016


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:371)  358  0.00 0.27 0.00  USDA014F_G08_BE495786Ld09P032F01P032F07F1_052.ab1        1   372 (163)  C USDA014R_G08_BE495786Ld09P032F01P032F07R1_052.ab1   (134)   373     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C USDA014R_G08_BE495786Ld09P032F01P032F07R1_052.ab1   507 
  248    USDA014F_G08_BE495786Ld09P032F01P032F07F1_052.ab1   113 
  280  C USDA014R_G08_BE495786Ld09P032F01P032F07R1_052.ab1   228 
  364    USDA014F_G08_BE495786Ld09P032F01P032F07F1_052.ab1   229 
  388  C USDA014R_G08_BE495786Ld09P032F01P032F07R1_052.ab1   120 
  396    USDA014F_G08_BE495786Ld09P032F01P032F07F1_052.ab1   261 
  428  C USDA014R_G08_BE495786Ld09P032F01P032F07R1_052.ab1    80 
  440    USDA014F_G08_BE495786Ld09P032F01P032F07F1_052.ab1   305 
  472  C USDA014R_G08_BE495786Ld09P032F01P032F07R1_052.ab1    36 
  484    USDA014F_G08_BE495786Ld09P032F01P032F07F1_052.ab1   349 
Contig length: old 670, new 670

Contig length: old 670, new 670
New start: 0