No. words: 463; after pruning: 437


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -2.4 -2.4 (1,1:266)  135  1.24 0.00 1.86  USDA021F_B12_BE495786Sn27P043F01P032F011F1_094.ab1      109   269 (35)  C USDA021R_B12_BE495786Sn27P043F01P032F011R1_094.ab1   (0)   159     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.4       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  70 nodes

 37 str. conn. components

Path
    1    USDA021F_B12_BE495786Sn27P043F01P032F011F1_094.ab1     1 
  201  C USDA021R_B12_BE495786Sn27P043F01P032F011R1_094.ab1    67 
  205    USDA021F_B12_BE495786Sn27P043F01P032F011F1_094.ab1   205 
Contig length: old 304, new 304

Contig length: old 304, new 304
New start: 0