No. words: 1578; after pruning: 1538


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:1142)  409  0.46 0.00 0.00  USDA031F_E01_BE495997At01P004G04P004G101F3_007.ab1      346   780 (0)  C USDA031R_E01_BE495997At01P004G04P004G101R3_007.ab1   (0)   798   364 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1    USDA031F_E01_BE495997At01P004G04P004G101F3_007.ab1     1 
  530  C USDA031R_E01_BE495997At01P004G04P004G101R3_007.ab1   614 
  534    USDA031F_E01_BE495997At01P004G04P004G101F3_007.ab1   534 
  562  C USDA031R_E01_BE495997At01P004G04P004G101R3_007.ab1   582 
  566    USDA031F_E01_BE495997At01P004G04P004G101F3_007.ab1   566 
  582  C USDA031R_E01_BE495997At01P004G04P004G101R3_007.ab1   562 
  607    USDA031F_E01_BE495997At01P004G04P004G101F3_007.ab1   607 
  611  C USDA031R_E01_BE495997At01P004G04P004G101R3_007.ab1   533 
  651    USDA031F_E01_BE495997At01P004G04P004G101F3_007.ab1   651 
  663  C USDA031R_E01_BE495997At01P004G04P004G101R3_007.ab1   481 
  727    USDA031F_E01_BE495997At01P004G04P004G101F3_007.ab1   727 
  731  C USDA031R_E01_BE495997At01P004G04P004G101R3_007.ab1   413 
Contig length: old 1143, new 1143

Contig length: old 1143, new 1143
New start: 0