No. words: 1650; after pruning: 1624


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:1150)  468  0.40 0.00 0.00  USDA031F_F01_BE495997At02P004G04P004G101F3_005.ab1      417   915 (0)  C USDA031R_F01_BE495997At02P004G04P004G101R3_005.ab1   (0)   735   237 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1    USDA031F_F01_BE495997At02P004G04P004G101F3_005.ab1     1 
  608  C USDA031R_F01_BE495997At02P004G04P004G101R3_005.ab1   544 
  612    USDA031F_F01_BE495997At02P004G04P004G101F3_005.ab1   612 
  628  C USDA031R_F01_BE495997At02P004G04P004G101R3_005.ab1   524 
  636    USDA031F_F01_BE495997At02P004G04P004G101F3_005.ab1   636 
  664  C USDA031R_F01_BE495997At02P004G04P004G101R3_005.ab1   488 
  668    USDA031F_F01_BE495997At02P004G04P004G101F3_005.ab1   668 
  716  C USDA031R_F01_BE495997At02P004G04P004G101R3_005.ab1   436 
  728    USDA031F_F01_BE495997At02P004G04P004G101F3_005.ab1   728 
  736  C USDA031R_F01_BE495997At02P004G04P004G101R3_005.ab1   416 
  804    USDA031F_F01_BE495997At02P004G04P004G101F3_005.ab1   804 
  808  C USDA031R_F01_BE495997At02P004G04P004G101R3_005.ab1   344 
Contig length: old 1151, new 1151

Contig length: old 1151, new 1151
New start: 0