No. words: 862; after pruning: 836


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 0.8 (1,1:276)  252  0.37 0.00 0.37  USDA031F_B02_BE495997Ld04P004G04P004G101F3_014.ab1        5   274 (172)  C USDA031R_B02_BE495997Ld04P004G04P004G101R3_014.ab1   (144)   272     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  130 nodes

 67 str. conn. components

Path
    1  C USDA031R_B02_BE495997Ld04P004G04P004G101R3_014.ab1   416 
  260    USDA031F_B02_BE495997Ld04P004G04P004G101F3_014.ab1   120 
Contig length: old 585, new 586

Contig length: old 586, new 586
New start: 0