No. words: 864; after pruning: 838


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 2.1 (1,1:277)  249  0.73 0.00 0.73  USDA031F_D02_BE495997Ld06P004G04P004G101F3_010.ab1        5   279 (168)  C USDA031R_D02_BE495997Ld06P004G04P004G101R3_010.ab1   (144)   273     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  130 nodes

 67 str. conn. components

Path
    1  C USDA031R_D02_BE495997Ld06P004G04P004G101R3_010.ab1   417 
  260    USDA031F_D02_BE495997Ld06P004G04P004G101F3_010.ab1   120 
Contig length: old 586, new 587

Contig length: old 587, new 587
New start: 0