No. words: 1785; after pruning: 1759


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:1115)  629  0.45 0.00 0.00  USDA031F_A01_BE495997Tu01P004G04P004G101F3_015.ab1      312   980 (0)  C USDA031R_A01_BE495997Tu01P004G04P004G101R3_015.ab1   (0)   805   137 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1    USDA031F_A01_BE495997Tu01P004G04P004G101F3_015.ab1     1 
  603  C USDA031R_A01_BE495997Tu01P004G04P004G101R3_015.ab1   514 
  607    USDA031F_A01_BE495997Tu01P004G04P004G101F3_015.ab1   607 
  611  C USDA031R_A01_BE495997Tu01P004G04P004G101R3_015.ab1   506 
  647    USDA031F_A01_BE495997Tu01P004G04P004G101F3_015.ab1   647 
  659  C USDA031R_A01_BE495997Tu01P004G04P004G101R3_015.ab1   458 
  675    USDA031F_A01_BE495997Tu01P004G04P004G101F3_015.ab1   675 
  683  C USDA031R_A01_BE495997Tu01P004G04P004G101R3_015.ab1   434 
  707    USDA031F_A01_BE495997Tu01P004G04P004G101F3_015.ab1   707 
  715  C USDA031R_A01_BE495997Tu01P004G04P004G101R3_015.ab1   402 
  723    USDA031F_A01_BE495997Tu01P004G04P004G101F3_015.ab1   723 
  731  C USDA031R_A01_BE495997Tu01P004G04P004G101R3_015.ab1   386 
  743    USDA031F_A01_BE495997Tu01P004G04P004G101F3_015.ab1   743 
  747  C USDA031R_A01_BE495997Tu01P004G04P004G101R3_015.ab1   370 
Contig length: old 1116, new 1116

Contig length: old 1116, new 1116
New start: 0