No. words: 1559; after pruning: 1533


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:758)  732  0.26 0.00 0.00  USDA004F_C11_BE497177As01P004F05F11F1_082.ab1        1   759 (23)  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   (18)   759     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   777 
   26    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1     8 
   54  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   724 
   62    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1    44 
   66  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   712 
   70    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1    52 
  142  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   636 
  150    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   132 
  174  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   604 
  178    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   160 
  202  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   576 
  206    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   188 
  210  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   568 
  258    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   240 
  262  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   516 
  282    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   264 
  302  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   476 
  326    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   308 
  330  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   448 
  350    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   332 
  354  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   424 
  366    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   348 
  374  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   404 
  386    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   368 
  390  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   388 
  431    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   413 
  443  C USDA004R_C11_BE497177As01P004F05F11R1_082.ab1   335 
  771    USDA004F_C11_BE497177As01P004F05F11F1_082.ab1   753 
Contig length: old 800, new 800

Contig length: old 800, new 800
New start: 0